Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015874335.1_cds_XP_016435446.1_31406
CDS Infomation

[gene=LOC107761706] [db_xref=GeneID:107761706] [protein=vacuolar-sorting receptor 3-like] [protein_id=XP_016435446.1] [location=complement(join(1893..1991,2718..2827,2915..3043,3473..3539,3637..3719,4358..4439,4542..4618,4698..4781,4853..4922,5005..5093,5168..5860,6810..7122))] [gbkey=CDS]
Sequence

ATGGGGGTTTCTAAAATTTGGAAAGCAGCAATCTTTCTAGGGTTTCTATGGCTGAACCTA
TTATTCCAATCAGTAGTGGGTCGTTTCGTGGTGGAGAAAAACAGCTTAAGGGTTGTTTCG
CCTGATGATATTAAAGGCACTTACGATAGTGCAATTGGCAACTTTGGGATTCCACAATAT
GGAGGTAGTCTTCCCGGTACTGTGGTTTATCCAAAGGGAAACCAAAAGGGTTGTCGAAAC
TTTGATGATTCTGGGATTTCTTTTAAGTCAAAATCTGGTGCTATGCCCACCTTTGTTCTC
GTCGATCGTGGAGATTGCTTCTTCGCTCTGAAGGTCTGGAATGCCCAAAATGCCGGCGCC
GCTGCCGTTCTAGTTGCAGATGATGTTGACGAAAGGCTGATAACCATGGACACACCTGAA
GCGGATGGTTCTTCTGCAAAATACATTGAGAACATAACAATACCATCTGCCCTCATTGAG
AAAAGCTTTGCAGAGAAGTTGAAGAAAGCTGTGAGTGCAGGAGAAATGGTTAATGTGAAT
CTTGATTGGAGAGAAGCTGTGCCCCACCCAGATGATCGTGTGGAGTATGAACTGTGGACA
AGTAGCAATGATGAATGTGGGTTCAAGTGTGACATGTTAATGAAATATGTCAAAGATTTT
AAGGGTGCAGCACAAATTCTTGAGAAAGGTGGATATACTCAATTCACACCCCACTATATT
ACTTGGTATTGTCCTCAGGCATTCACTGTAAGCAAGCAGTGCAAGTCTCAATGTATCAAC
CACGGAAGATATTGTGCTCCTGATCCTGAACAAGATTTCAGCACTGGATATGAAGGGAAG
GACGTTGTTATTGAGAACTTGAGGCAGCTGTGTGTTTTTAAAGTGGCCAATGAGACAAAG
AAGCCATGGGTGTGGTGGGATTATGTGACTGATTTTCAGATTCGATGTCCCATGAAGGAG
AAAAAATATAATAAGGAATGTGCTGATGCTGTTATTAAGTCTTTAGGTCTTGATTTAAGA
AAGATTGAGAAGTGTATGGGAGACCCTAATGCTGATGAGGACAATCCTGTTCTGAAAGAA
GAGCAAAATGCTCAAGTTGGTAAAGGAACAAGAGGGGATGTCACCATATTACCTACTCTT
GTTGTCAACAATCGACAATATCGAGGGAAATTGGAGAAAGGAGCTGTTTTAAAGGCTATT
TGTGCTGGTTTTGAGGAGACTACTGAGCCTGCAGTTTGTTTGAGCGACGACGTGGAGACA
AATGAGTGCCGGGATAATAATGGTGGCTGCTGGCAAGACAAGGCTGCTAATATCACTGCC
TGCAAGGATACATTTCGTGGTAGAGTGTGTGAATGCCCTGTGGTTGATGGTGTGCAGTTT
AAGGGAGATGGTTATAGCTCTTGTACAGCAAGTGGACCTGGGCGATGCAAACTCAACAAT
GGAGGCTGTTGGCATGACACTCGAGATGGTCATACTTACTCTGCTTGTGTGGATAATGAG
GAGGGAAAATGCTCTTGTCCTCCAGGATTTAAAGGTGATGGTGTTAAAAGTTGTGACGAT
ATTGATGAATGTAAAGAAAAGAAAGCATGTCAATGCCCAGAATGCAGCTGCAAGAATACA
TGGGGCAGTTATGAGTGCAGTTGTAGTGGGGACCTACTGTACATTAGAGACCATGATACC
TGCATAAGCAAGAGAGCTAGAGAAGTCAAATCGGCATGGGCCGCAGTTTGGGCCATTTTG
ATTGGATTGGCCATGGCTGGTGGTGGTGCTTATCTTGTATACAAATACAGATTGAGGTCG
TACATGGATTCTGAGATCAGGGCTATTATGGCACAATATATGCCGCTAGACAGCCAAAAC
GAAGTCCCAAATCATGTCAGTGACGAACGTGCTTGA

Peptide Sequence

PEP ID

XP_016435446.1
PEP Infomation

PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana tabacum]
Sequence

MGVSKIWKAAIFLGFLWLNLLFQSVVGRFVVEKNSLRVVSPDDIKGTYDSAIGNFGIPQY
GGSLPGTVVYPKGNQKGCRNFDDSGISFKSKSGAMPTFVLVDRGDCFFALKVWNAQNAGA
AAVLVADDVDERLITMDTPEADGSSAKYIENITIPSALIEKSFAEKLKKAVSAGEMVNVN
LDWREAVPHPDDRVEYELWTSSNDECGFKCDMLMKYVKDFKGAAQILEKGGYTQFTPHYI
TWYCPQAFTVSKQCKSQCINHGRYCAPDPEQDFSTGYEGKDVVIENLRQLCVFKVANETK
KPWVWWDYVTDFQIRCPMKEKKYNKECADAVIKSLGLDLRKIEKCMGDPNADEDNPVLKE
EQNAQVGKGTRGDVTILPTLVVNNRQYRGKLEKGAVLKAICAGFEETTEPAVCLSDDVET
NECRDNNGGCWQDKAANITACKDTFRGRVCECPVVDGVQFKGDGYSSCTASGPGRCKLNN
GGCWHDTRDGHTYSACVDNEEGKCSCPPGFKGDGVKSCDDIDECKEKKACQCPECSCKNT
WGSYECSCSGDLLYIRDHDTCISKRAREVKSAWAAVWAILIGLAMAGGGAYLVYKYRLRS
YMDSEIRAIMAQYMPLDSQNEVPNHVSDERA

Transcript Sequence

Gene sequence data has not been registered.